List of Neuroimaging Software

Neuroimaging software is used to study the structure and function of the brain.
The ultimate source of neuroimaging tools and software: NITRC
This website contains the NIH Blueprint for Neuroscience Research funded clearinghouse of many of software applications, as well as hardware.

1. 3D Slicer developed at Harvard has many uses, including diffusion tensor imaging tractography.
2. Analysis of Functional NeuroImages (AFNI)
3. Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic. AnalyzeDirect homepage
4. Bioimage Suite.
5. BrainMagix
6. BESA (Brain Electrical Source Analysis)
7. Bergen EEG-fMRI Toolbox plugin for EEGLab (remove fMRI gradients from simultaneous EEG-fMRI recordings)
8. Brain Image Analysis Package
9. BrainVISA
10. BrainVoyager
11. CamBA
12. Camino Open-source toolkit for diffusion MRI. Camino homepage
13. Caret [7] Van Essen Lab, Washington University in St. Louis
14. Fiasco/FIAT
15. FMRIB Software Library (FSL)
17. FreeSurfer
18. ISAS (Ictal-Interictal SPECT Analysis by SPM)
19. Leipzig Image Processing and Statistical Inference Algorithms (LIPSIA)
20. LONI Pipeline Laboratory of Neuro Imaging, UCLA
21. Mango, developed at the Research Imaging Center, University of Texas Health Science Center at San Antonio
22. MNI MINC McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University
23. MRIcro
24. mrVista (Stanford)
25. Net Station
26. Neuroimaging software installation support
27. NeuroLens
28. NIfTI
29. NITRC The Neuroimaging Informatics Tools and Resources Clearinghouse. An NIH funded database of neuroimaging tools
30. nordicICE
31. PerfScape & NeuroScape
32. Prism suite
33. PyMVPA
34. SHAring NeurOImaging Resources (Shanoir) is a neuroinformatics platform designed to share, archive, search and visualize neuroimaging data. Shanoir homepage
35. Signed differential mapping (SDM)
36. Statistical parametric mapping (SPM)
37. aidScans, tumor volume estimation


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